PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G195200.1
Common NameB456_004G195200, LOC105792035
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 276aa    MW: 30028.9 Da    PI: 8.3109
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G195200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-19140190255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrdp +ng  +r++lg+f tae+Aa a+++a+ +++g
  Gorai.004G195200.1 140 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFETAEDAALAYDKAAYRMRG 190
                         7********.***********9987..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.5E-32139198IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-23140200IPR016177DNA-binding domain
PROSITE profilePS5103224.223140198IPR001471AP2/ERF domain
CDDcd000181.28E-30140198No hitNo description
SMARTSM003801.1E-39140204IPR001471AP2/ERF domain
PfamPF008471.8E-13140190IPR001471AP2/ERF domain
PRINTSPR003675.5E-11141152IPR001471AP2/ERF domain
PRINTSPR003675.5E-11164180IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MEMYLSSNDS DLAMLDSIRR HLLGDPSDFR LDASIDCTTT TTTTAPPMVC RSSSFNRLYP  60
CLTETWGDLP LKENDSEDML VFGFLRDALT VGWAPSDNSS MNFLPIKPEP QEISFEAPVR  120
KVDRAVNTVA PAAVPAKARH YRGVRQRPWG KFAAEIRDPA KNGARVWLGT FETAEDAALA  180
YDKAAYRMRG SKALLNFPLR VNSGEPDPVR VTSKRTSPEP SNSSSSGSVN GSPKRRRKVT  240
PSASVVAQAG LDMGSGVEIK YEIGSCTHGN QVLLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-42136205170ATERF1
3gcc_A4e-42136205170ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232238PKRRRKV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.21203e-79flower| flowering
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012475850.10.0PREDICTED: ethylene-responsive transcription factor 2-like
SwissprotO803372e-88EF100_ARATH; Ethylene-responsive transcription factor 1A
TrEMBLA0A0D2R7Q60.0A0A0D2R7Q6_G
STRINGPOPTR_0003s07910.16e-99(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.13e-68ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]